jvx.geom

## Class PgPolygonOnElementSet

- java.lang.Object
- - jv.object.PsObject
  - - jv.project.PgGeometry
    - - jv.geom.PgPointSet
      - - jv.geom.PgPolygon
        - - jvx.geom.PgPolygonOnElementSet

- All Implemented Interfaces:
    java.io.Serializable, java.lang.Cloneable, PsUpdateIf, PgGeometryIf

      public class PgPolygonOnElementSet
      extends PgPolygon

  A polygon on a triangulated element set whose vertices are given by barycentric coordinates. Every point of a `PolygonOnElementSet` is given by the element index of the element the point lies on, and the barycentric coordinates with respect to this triangle. The base geometry must be a triangulated element set.
  See Also:
    `PgPolygon`, `PgElementSet`, `PgPointSetOnElementSet`, Serialized Form

- - ### Field Summary

    Fields
    Modifier and Type | Field and Description
    --- | ---
    `static double` | `BARYEPS` Default accuracy used at checks for zero in barycentric coordinates (used e.g. in exp(...)).
    `double` | `m_eps` This accuracy is actually used for zero-checks in barycentric coordinates (used e.g. in exp(...)).

    - ### Fields inherited from class jv.geom.PgPolygon

      `BINORMAL, CURVATURE_NORMAL, NORMAL, OFFSET_NORMAL`

    - ### Fields inherited from class jv.object.PsObject

      `HAS_BOUNDARY_PANEL, HAS_CONFIG_PANEL, HAS_INFO_PANEL, HAS_LABEL_PANEL, HAS_MATERIAL_PANEL, HAS_TEXTURE_PANEL, HAS_VECTOR_PANEL, INSPECTOR_INFO, INSPECTOR_INFO_EXT, IS_DELETED, IS_FIXED, IS_FOCUSSED, IS_PICKED, IS_SELECTED, IS_USED, NUM_TAGS`

    - ### Fields inherited from interface jv.project.PgGeometryIf

      `AMBIENT_H2_HYPERBOLIC, AMBIENT_H3_HYPERBOLIC, AMBIENT_H4_HYPERBOLIC, AMBIENT_PROJECTIONS, AMBIENT_R1_EUCLIDEAN, AMBIENT_R2_EUCLIDEAN, AMBIENT_R3_EUCLIDEAN, AMBIENT_R4_EUCLIDEAN, AMBIENT_R5_EUCLIDEAN, AMBIENT_S1_SPHERE, AMBIENT_S2_SPHERE, AMBIENT_S3_SPHERE, AMBIENT_S4_SPHERE, AMBIENT_SPACES, BLEND_ALPHA, BLEND_MATERIAL, BLEND_REPLACE, FILTER_DIRECT, FILTER_LINEAR, FILTER_QUADRATIC, HAS_METHOD_MENU, INSPECTOR_CONTROL, INSPECTOR_CONTROL_EXT, INSPECTOR_MATERIAL, INSPECTOR_MATERIAL_EXT, INSPECTOR_TEXTURE, INSPECTOR_TEXTURE_EXT, LABEL_BASE, LABEL_CENTER, LABEL_HEAD, LABEL_MIDDLE, LABEL_TAIL, LABEL_TOP, m_numLabelTypes, METHOD_EXT, PERIODIC_BOTH, PERIODIC_HEIGHT, PERIODIC_NONE, PERIODIC_WIDTH, PROJ_KLEIN_BALL, PROJ_PARALLEL, PROJ_POINCARE_BALL, PROJ_STEREOGRAPHIC, PROJ_UPPER_HALFSPACE, SIDE_BACK, SIDE_BOTH, SIDE_FRONT, SIDE_NONE`

  - ### Constructor Summary

    Constructors
    Constructor and Description
    `PgPolygonOnElementSet(int dim)` Constructs a new polygon on an element set triangulation.
    `PgPolygonOnElementSet(PgElementSet geom)` Constructs a new polygon on an element set triangulation.

  - ### Method Summary

    Methods
    Modifier and Type | Method and Description
    --- | ---
    `void` | `addPolygon(PgPolygonOnElementSet poly)` Deprecated. since JavaView 3.95.004, use merge(PgGeometryIf).
    `boolean` | `blend(double s, PgGeometry ag, double t, PgGeometry bg)` Blend between two polygons using `this = s*ag + t*bg`.
    `java.lang.Object` | `clone()` Duplicate geometry by recursively cloning all instance variables except inspector panels and lists of registered listeners.
    `void` | `computeNormalCurvature()` Compute the normal curvature of a surface mesh along a curve on the mesh.
    `void` | `computeVertices()` Compute all geometric vertex positions on the base surface from barycentric coordinates.
    `void` | `copy(PsObject object)` Copy instance variables by duplication, not by copying a reference.
    `void` | `copyIntrinsicData(PgPolygonOnElementSet source)` deprecated since JavaView 3.96.006, use copy() instead.
    `int` | `eval(PdVector[] bary, PiVector outelem, double stepSize)` Evaluates the polygon in steps of given size.
    `double` | `eval(PdVector bary1, PdVector bary2, PdVector bary3, PiVector outelem, double step)` Evaluates the polygon in given steps and returns the calculated points in order.
    `PdBaryDir` | `exp(int iniElem, PdBary iniBary, PdBaryDir iniDir, double length)` Deprecated. Use jvx.numeric.PnStraightestGeodesic .
    `PdBaryDir` | `exp(int iniElem, PdBary iniBary, PdBaryDir iniDir, double length, PgPolygon outpoly)` Deprecated. Use jvx.numeric.PnStraightestGeodesic .
    `void` | `flipOrientation()` Change orientation of the polygon by inverting the order of the vertices, i.e. the end point becomes the first point.
    `PdBary[]` | `getBary()` Deprecated. since JavaView 3.96.006, use getVertexBary() instead.
    `PdBary` | `getBary(int vertInd)` Deprecated. since JavaView 3.96.006, use getVertexBary(int) instead.
    `PiVector` | `getElemInd()` Deprecated. since JavaView 3.96.006, use getVertexElemInd(int) instead.
    `int` | `getElemInd(int vertInd)` Deprecated. since JavaView 3.96.006, use getVertexElemInd(int) instead.
    `PgElementSet` | `getGeometry()` Get the underlying geometry.
    `static PgVectorField` | `getNormalCurvature(PgPolygonOnElementSet polygon, PdMatrix[] shapeOperator, PgVectorField normCurvature)` Compute the normal curvature of a surface mesh along a curve on the mesh.
    `PgPolygon` | `getPolygon()` Returns a polygon in world coordinates.
    `boolean` | `getPolygon(PgPolygon out)` Returns a polygon in world coordinates.
    `PdBary[]` | `getVertexBary()` Get array of barycentric positions for read and write access, but do not modify the size of any vector.
    `PdBary` | `getVertexBary(int vertInd)` Get barycentric coordinates of the vertex at given index.
    `PiVector` | `getVertexElemInd()` Get element indices of all vertices.
    `int` | `getVertexElemInd(int vertInd)` Get element index of the vertex at given index.
    `void` | `init()` Initialize and reset instance variables after call to super.init().
    `void` | `makeNormalsFromSurfaceNormals()` Create a (vertex-based) normal field along the curve from the (vertex-based) normal field of the surface.
    `static void` | `makeNormalsFromSurfaceNormals(PgPolygonOnElementSet polygon)` Create a (vertex-based) normal field along the curve from the (vertex-based) normal field of the surface.
    `boolean` | `merge(PgGeometryIf aGeom)` Merge polygon with current object and store union of both objects in 'this'.
    `static PdBaryDir[]` | `projectCurveOntoElementSet(PgElementSet geom, PgPolygon curve, PdBary start, PgPolygonOnElementSet outCurve)` Project a polygon onto the surface.
    `static PdBaryDir[]` | `projectCurveOntoElementSet(PgElementSet geom, PgPolygon curve, PgPolygonOnElementSet outCurve)` Project a polygon onto the surface.
    `int[]` | `removeMarkedVertices()` Remove vertices marked with tag PsObject#IS_DELETED from polygons.
    `void` | `setAccuracy(double newacc)` Sets the accuracy that is used at checks for zero in barycentric coordinates.
    `void` | `setBary(int vertInd, int elemInd, PdBary bary)` Deprecated. since JavaView 3.96.006, use setVertexBary(int, int, PdBary) instead.
    `void` | `setGeometry(PgElementSet geom)` Assign a new underlying simplicial surface.
    `void` | `setMaxNumVertices(int numVertices)` Allocate given number of vertices, and allocate normals, colors etc.
    `void` | `setVertex(int vertInd, int elemInd, PdBary bary)` Deprecated. since JavaView 3.96.006, use setVertexBary(int, int, PdBary) instead.
    `void` | `setVertex(int vertInd, PdBary bary)` Deprecated. since JavaView 3.96.006, use setVertexBary(int, int, PdBary) instead.
    `void` | `setVertexBary(int vertInd, int elemInd, PdBary bary)` Set barycentric coordinate and element index of vertex at given index, and also update the position of the corresponding vertex.
    `void` | `setVertexBary(int vertInd, PdBary bary)` Set barycentric coordinate and element index of vertex at given index, and also update the position of the corresponding vertex.
    `void` | `swap(int i, int j)` Swap vertices pos and otherPos.
    `PdBary` | `swap(PgPolygonOnElementSet other, int pos, int otherPos, int num)` Swaps a specified number of vertices in this polygon, beginning at the specified position, with vertices of the specified polygon.
    `java.lang.String` | `toString()` A long long description
    `void` | `updateVertices()` Updates the Euclidean coordinates of the vertices from their barycentric coordinates.

    - ### Methods inherited from class jv.geom.PgPolygon

      `assureEdgeColors, assureEdgeNormals, assureEdgeSizes, checkTriangleCut, computeCircle, computeEight, getEdgeColors, getEdgeNormals, getEdges, getEdgeSizes, getFVector, getGlobalEdgeColor, getGlobalEdgeNormalColor, getGlobalEdgeNormalLength, getGlobalEdgeNormalSize, getGlobalEdgeSize, getGlobalEdgeTagColor, getGlobalPolygonColor, getGlobalPolygonSize, getGlobalPolygonTagColor, getJvx, getLength, getLengthOfEdge, getNumEdges, hasEdgeColors, hasEdgeNormals, intersectionWithLine, isClosed, isShowingEdgeColorFromVertices, isShowingEdgeColors, isShowingEdgeFromVertexColors, isShowingEdgeLabels, isShowingEdgeNormalArrow, isShowingEdgeNormals, isShowingEdges, isShowingEdgeSizes, isShowingPolygonColors, isShowingPolygonEndArrow, isShowingPolygonStartArrow, isShowingSmoothEdgeColors, isShowingSmoothLighting, makeBiNormals, makeCurvatureNormals, makeEdgeColorsFromLength, makeEdgeColorsFromXYZ, makeEdgeColorsFromZ, makeEdgeColorsFromZHue, makeEdgeFromVertexColors, makeNormals, makeNormals, makeOffsetNormals, makeVertexColorsFromLength, makeVertexFromEdgeColors, makeVertexNormals, paint, removeEdgeColors, removeEdgeNormals, removeEdgeSizes, setClosed, setDimOfVertices, setEdgeColor, setEdgeColors, setEdgeNormal, setEdgeNormals, setEdgeSizes, setGlobalEdgeColor, setGlobalEdgeNormalColor, setGlobalEdgeNormalLength, setGlobalEdgeNormalSize, setGlobalEdgeSize, setGlobalEdgeTagColor, setGlobalPolygonColor, setGlobalPolygonSize, setGlobalPolygonTagColor, setJvx, setNumVertices, showEdgeColorFromVertices, showEdgeColors, showEdgeFromVertexColors, showEdgeLabels, showEdgeNormalArrow, showEdgeNormals, showEdges, showEdgeSizes, showPolygonColors, showPolygonEndArrow, showPolygonStartArrow, showSmoothEdgeColors, showSmoothLighting, triangulate, update, useGlobalPolygonColor`

    - ### Methods inherited from class jv.geom.PgPointSet

      `addGeometryItem, addVectorField, addVertex, applyAmbientMatrix, applyModelingMatrix, assureVertexColors, assureVertexNormals, assureVertexSizes, assureVertexTextures, clearTagVertex, computeCone, computeCylinder, computeDisk, computePlane, computeRotation, computeSnail, computeSphere, computeTorus, copySelect, getAmbientBounds, getBounds, getCenterOfBndBox, getCenterOfGravity, getDimOfColors, getDimOfTextures, getDimOfVectors, getEulerCharacteristic, getGlobalVectorColor, getGlobalVectorLength, getGlobalVectorSize, getGlobalVertexColor, getGlobalVertexNormalColor, getGlobalVertexNormalLength, getGlobalVertexNormalSize, getGlobalVertexSize, getGlobalVertexTagColor, getIndexOfVectorField, getMarkedVertices, getMaxNumVertices, getNumVectorFields, getNumVertices, getSelectedVectorField, getShininess, getSpecularColor, getTexture, getTextureImage, getTextureImageName, getTransparency, getVectorField, getVectorField, getVertex, getVertexColor, getVertexColors, getVertexNormal, getVertexNormals, getVertexSize, getVertexSizes, getVertexTexture, getVertexTextures, getVertices, hasTagVertex, hasVertex, hasVertex, hasVertexColors, hasVertexNormals, hasVertexSizes, hasVertexTextures, isDefaultLabelEnabled, isEnabledIndexLabels, isShowingIndices, isShowingSingleVectorField, isShowingTaggedVertices, isShowingTransparency, isShowingVectorArrow, isShowingVectorArrows, isShowingVectorColors, isShowingVectorField, isShowingVectorFields, isShowingVertexColors, isShowingVertexLabels, isShowingVertexNormalArrow, isShowingVertexNormals, isShowingVertexOutline, isShowingVertexSizes, isShowingVertexTexture, isShowingVertices, makeColorFromVectorLength, makeQuadrVertexTexture, makeVertexColorsFromXYZ, makeVertexColorsFromZ, makeVertexColorsFromZHue, makeVertexTextureFromBndBox, makeVertexTextureFromCylinder, makeVertexTextureFromSphere, makeVertexTextureFromUV, projectFromAmbientSpace, projectToSphere, reflect, removeAllVectorFields, removeHiddenVectorFields, removeTexture, removeVectorField, removeVertex, removeVertexColors, removeVertexNormals, removeVertexSizes, scale, scale, selectVectorField, setCenterOfBndBox, setDefaultLabelEnabled, setDimOfColors, setDimOfTextures, setDimOfVectors, setEnabledIndexLabels, setGlobalVectorColor, setGlobalVectorLength, setGlobalVectorSize, setGlobalVertexColor, setGlobalVertexNormalColor, setGlobalVertexNormalLength, setGlobalVertexNormalSize, setGlobalVertexSize, setGlobalVertexSize, setGlobalVertexTagColor, setShininess, setSpecularColor, setState, setTagVertex, setTexture, setTextureImage, setTextureImageName, setTransparency, setVertex, setVertex, setVertex, setVertex, setVertexColor, setVertexColors, setVertexNormal, setVertexNormals, setVertexSize, setVertexSizes, setVertexTexture, setVertexTextures, setVertices, showIndices, showSingleVectorField, showTaggedVertices, showTransparency, showVectorArrow, showVectorArrows, showVectorColors, showVectorField, showVectorFields, showVertexColors, showVertexLabels, showVertexNormalArrow, showVertexNormals, showVertexOutline, showVertexSizes, showVertexTexture, showVertices, translate`

    - ### Methods inherited from class jv.project.PgGeometry

      `addDisplay, addElement, addPolygon, clearTagElement, clearTagPolygon, convertWorldToModel, fillMethodMenu, fillMethodMenu, getAmbientInvMatrix, getAmbientMatrix, getAmbientProjection, getAmbientSpace, getAuthorInfo, getAuthors, getCenter, getCenterOfElement, getControlPanel, getDiameter, getDimOfSimplex, getDimOfVertices, getDisplayList, getDisplays, getElement, getGeometryInfo, getLabelAttribute, getLabelColor, getLabelFont, getLabelSize, getLabelStyle, getMaterialPanel, getModelMatrix, getPolygon, getState, getTitle, getType, getVersion, getVersionType, hasAmbientMatrix, hasDisplay, hasModelMatrix, hasTagElement, hasTagPolygon, isConfigurable, isEnabledInstanceSharing, isShowingBndBox, isShowingCenter, isShowingName, isShowingTitle, isVisible, removeDisplay, removeElement, removeMethodMenus, removePolygon, setAmbientMatrix, setAmbientProjection, setAmbientSpace, setAuthorInfo, setAuthors, setCenter, setDimOfSimplex, setElement, setEnabledInstanceSharing, setGeometryInfo, setLabelAttribute, setLabelAttribute, setLabelColor, setLabelFont, setLabelSize, setLabelStyle, setModelMatrix, setPolygon, setTagElement, setTagPolygon, setTitle, setType, setVersion, setVersionType, setVisible, showBndBox, showCenter, showName, showTitle`

    - ### Methods inherited from class jv.object.PsObject

      `addInspector, addUpdateListener, assureInspector, clearTag, clone, clone, getFather, getInfoPanel, getInspector, getName, getNumObjects, getSymbol, hasInspector, hasTag, hasUpdateListener, instanceOf, instanceOf, newInspector, newInspector, removeInspector, removeInspector, removeUpdateListener, setName, setParent, setSymbol, setTag, updatePanels`

    - ### Methods inherited from class java.lang.Object

      `equals, getClass, hashCode, notify, notifyAll, wait, wait, wait`

    - ### Methods inherited from interface jv.project.PgGeometryIf

      `assureInspector, getInfoPanel, getName, hasTag, setName`

    - ### Methods inherited from interface jv.object.PsUpdateIf

      `getFather, setParent`

- - ### Field Detail

    - #### BARYEPS

          public static double BARYEPS

      Default accuracy used at checks for zero in barycentric coordinates (used e.g. in exp(...)).

    - #### m_eps

          public double m_eps

      This accuracy is actually used for zero-checks in barycentric coordinates (used e.g. in exp(...)).

  - ### Constructor Detail

    - #### PgPolygonOnElementSet

          public PgPolygonOnElementSet(PgElementSet geom)

      Constructs a new polygon on an element set triangulation.
      Parameters:
        `geom` - Underlying element set, must be a triangulation.

    - #### PgPolygonOnElementSet

          public PgPolygonOnElementSet(int dim)

      Constructs a new polygon on an element set triangulation.
      Parameters:
        `dim` - Dimension of ambient space.

  - ### Method Detail

    - #### init

          public void init()

      Initialize and reset instance variables after call to super.init().
      Overrides:
        `init` in class `PgPolygon`

    - #### toString

          public java.lang.String toString()

      A long long description
      Specified by:
        `toString` in interface `PgGeometryIf`
      Overrides:
        `toString` in class `PgPolygon`

    - #### getGeometry

          public PgElementSet getGeometry()

      Get the underlying geometry.
      Returns:
        Reference to underlying triangulation.

    - #### setGeometry

          public void setGeometry(PgElementSet geom)

      Assign a new underlying simplicial surface. Method returns with warning if surface is not a triangulation.
      Parameters:
        `geom` - New underlying triangulation.

    - #### clone

          public java.lang.Object clone()

      Duplicate geometry by recursively cloning all instance variables except inspector panels and lists of registered listeners. The parent relationship is maintained only within this class but not to external classes. In general, all links of the clone to external objects are set to `null` except to the base geometry whose reference is kept.
      Specified by:
        `clone` in interface `PgGeometryIf`
      Overrides:
        `clone` in class `PgPolygon`
      See Also:
        `copy(PsObject)`

    - #### copy

          public void copy(PsObject object)

      Copy instance variables by duplication, not by copying a reference. Reference to base geometry is not changed.
      Overrides:
        `copy` in class `PgPolygon`
      Since:
        JavaView 2.65.000
      See Also:
        `clone()`

    - #### copyIntrinsicData

          public void copyIntrinsicData(PgPolygonOnElementSet source)

      deprecated since JavaView 3.96.006, use copy() instead.

    - #### setMaxNumVertices

          public void setMaxNumVertices(int numVertices)

      Allocate given number of vertices, and allocate normals, colors etc. if they already exist. All vertex allocation is done in this method. Method should not be called directly unless a specific allocation is required. Usually, a user would specify the number of vertices via setNumVertices().
      Overrides:
        `setMaxNumVertices` in class `PgPointSet`

    - #### getVertexBary

          public PdBary[] getVertexBary()

      Get array of barycentric positions for read and write access, but do not modify the size of any vector.

      Note, that the actual size of the vertex array may differ from getNumVertices() for efficiency reasons. Therefore, do not use bary.length but use getNumVertices().

      Note, the array is void as soon as the number of vertices changes. After issuing setNumVertices(int) then call this method again.

    - #### getVertexBary

          public PdBary getVertexBary(int vertInd)

      Get barycentric coordinates of the vertex at given index.
      Parameters:
        `vertInd` - Index of vertex.
      Returns:
        Barycentric coordinates of vertex.
      See Also:
        `getVertexElemInd(int)`

    - #### getVertexElemInd

          public int getVertexElemInd(int vertInd)

      Get element index of the vertex at given index.
      Parameters:
        `vertInd` - index of vertex
      Returns:
        element index of given vertex
      See Also:
        `getVertexBary(int)`

    - #### getVertexElemInd

          public PiVector getVertexElemInd()

      Get element indices of all vertices.
      Returns:
        a new PiVector of the global element indices.

    - #### setVertexBary

          public void setVertexBary(int vertInd,
                           int elemInd,
                           PdBary bary)

      Set barycentric coordinate and element index of vertex at given index, and also update the position of the corresponding vertex. Barycentric coordinate is copied into another `PdBary` instance.
      Parameters:
        `vertInd` - Vertex index in vertex array.
        `elemInd` - Global element index where the vertex shall lie on.
        `bary` - Barycentric coordinates of vertex within the given element.

    - #### setVertexBary

          public void setVertexBary(int vertInd,
                           PdBary bary)

      Set barycentric coordinate and element index of vertex at given index, and also update the position of the corresponding vertex. Element index is contained in parameter bary.
      Parameters:
        `vertInd` - Vertex index in vertex array.
        `bary` - Barycentric coordinates of vertex within the given element.

    - #### computeVertices

          public void computeVertices()

      Compute all geometric vertex positions on the base surface from barycentric coordinates.

    - #### eval

          public double eval(PdVector bary1,
                    PdVector bary2,
                    PdVector bary3,
                    PiVector outelem,
                    double step)

      Evaluates the polygon in given steps and returns the calculated points in order. For two consecutive points of the polygon, one of the following conditions must hold:

           - both are on the same element, or
           - one of them is on an edge or vertex of a neighbor of the other point's element, or
           - both are on an edge or vertex of elements that have at least one common neighbor.

      Parameters:
        `bary1` - output: contains the first barycentric coordinate of all evaluated points
        `bary2` - output: contains the second barycentric coordinate of all evaluated points
        `bary3` - output: contains the third barycentric coordinate of all evaluated points
        `outelem` - output: element indices of all evaluated points
        `step` - stepsize in world metrics
      Returns:
        distance of last step (that is less than `step`)

    - #### eval

          public int eval(PdVector[] bary,
                 PiVector outelem,
                 double stepSize)

      Evaluates the polygon in steps of given size. For two consecutive points of the polygon, one of the following conditions must hold: - both are on the same element, or - the second point is on an edge or vertex of a neighbor of the first point's element.
      Parameters:
        `bary` - output: bary[0], [1], [2] contain the first, second and third barycentric coordinates, respectively, of the evaluated points.
        `outelem` - output: corresponding element indices
        `stepSize` - in world metrics
      Returns:
        number of evaluated points

    - #### getPolygon

          public PgPolygon getPolygon()

      Returns a polygon in world coordinates.
      Returns:
        polygon representation of this curve on success, otherwise null.

    - #### getPolygon

          public boolean getPolygon(PgPolygon out)

      Returns a polygon in world coordinates.
      Parameters:
        `out` - Polygon representation of this curve
      Returns:
        `true` on success

    - #### swap

          public PdBary swap(PgPolygonOnElementSet other,
                    int pos,
                    int otherPos,
                    int num)

      Swaps a specified number of vertices in this polygon, beginning at the specified position, with vertices of the specified polygon. If necessary, the number of vertices of the polygons is increased.
      Parameters:
        `other` - other polygon
        `pos` - starting position in this PgPolygonOnElementSet
        `otherPos` - starting position in the other PgPolygonOnElementSet
        `num` - number of vertices to swap
      Returns:
        last swapped vertex of this polygon

    - #### swap

          public void swap(int i,
                  int j)

      Swap vertices pos and otherPos.

    - #### merge

          public boolean merge(PgGeometryIf aGeom)

      Merge polygon with current object and store union of both objects in 'this'. Number of points and polygons is the sum of both objects unless last vertex of this polygon is PuMath.EPS close to first vertex of argument polygon, which would be identified.

      Polygon will not be closed, even if it was closed before.

      The merged geometry will have local colors allocated and assigned if

                          1. both the global color of both geometries are different, or
                          2. either geometry has local colors.

      If local colors are allocated but one of the geometries does not have local colors then its local colors are be assumed to be its global color. The merged geometry will show globalVertexColors if

                          1. the global color of both geometries is the same, and
                          2. both geometries are showing the global color.

      In all other cases the merged geometry will show local colors. The global color of the merged geometry is never changed.
      Specified by:
        `merge` in interface `PgGeometryIf`
      Overrides:
        `merge` in class `PgPolygon`
      Parameters:
        `aGeom` - Polygon set to be merged into 'this'
      Returns:
        `true` if method was successfull

    - #### blend

          public boolean blend(double s,
                      PgGeometry ag,
                      double t,
                      PgGeometry bg)

      Blend between two polygons using `this = s*ag + t*bg`.
      Specified by:
        `blend` in interface `PgGeometryIf`
      Overrides:
        `blend` in class `PgPolygon`
      Parameters:
        `s` - weight of vertices of first geometry
        `ag` - first geometry used for blending
        `t` - weight of vertices of second geometry
        `bg` - second geometry used for blending
      Returns:
        true on success

    - #### setAccuracy

          public void setAccuracy(double newacc)

      Sets the accuracy that is used at checks for zero in barycentric coordinates. (E.g. in exponential map computation. Setting this to a high value produces a straight geodesic that behaves more often as if it crosses a vertex.) Default is defined in static field BARYEPS.

    - #### flipOrientation

          public void flipOrientation()

      Change orientation of the polygon by inverting the order of the vertices, i.e. the end point becomes the first point.
      Overrides:
        `flipOrientation` in class `PgPolygon`

    - #### projectCurveOntoElementSet

          public static PdBaryDir[] projectCurveOntoElementSet(PgElementSet geom,
                                               PgPolygon curve,
                                               PdBary start,
                                               PgPolygonOnElementSet outCurve)

      Project a polygon onto the surface. All vertices of the projected polygon lie on edges of geom. Except if the polygon is not closed, then the first and last vertex lie in the inner of an element.
      Parameters:
        `geom` - Geometry.
        `curve` - Polygon in R^3.
        `start` - Barycentric coordinates as start position for the first vertex. This avoids a linear run over all elements of the geometry.
        `outCurve` - Will be filled with projected polygon. May be null.
      Returns:
        The edges of the output polygon on the elements of geom in barycentric coordinates. Null, if the projection fails.

    - #### projectCurveOntoElementSet

          public static PdBaryDir[] projectCurveOntoElementSet(PgElementSet geom,
                                               PgPolygon curve,
                                               PgPolygonOnElementSet outCurve)

      Project a polygon onto the surface. All vertices of the projected polygon lie on edges of geom. Except if the polygon is not closed, then the first and last vertex lie in the inner of an element.
      Parameters:
        `geom` - Geometry.
        `curve` - Polygon in R^3.
        `outCurve` - Will be filled with projected polygon. May be null.
      Returns:
        The edges of the output polygon on the elements of geom in barycentric coordinates. Null, if the projection fails.

    - #### exp

          public PdBaryDir exp(int iniElem,
                      PdBary iniBary,
                      PdBaryDir iniDir,
                      double length)

      Deprecated. Use jvx.numeric.PnStraightestGeodesic .
      Makes discrete exponential map, i.e. the straightest geodesic from given initial values.

    - #### exp

          public PdBaryDir exp(int iniElem,
                      PdBary iniBary,
                      PdBaryDir iniDir,
                      double length,
                      PgPolygon outpoly)

      Deprecated. Use jvx.numeric.PnStraightestGeodesic .
      Makes discrete exponential map, i.e. the straightest geodesic from given initial values.
      Parameters:
        `iniElem` - index of starting point's element
        `iniBary` - barycentric coordinates of the initial point
        `iniDir` - initial direction in barycentric notation
        `length` - Euclidean length of the geodesic is length*norm(iniDir)
        `outpoly` - if outpoly is not `null` the method puts the whole geodesic here
      Returns:
        `null` at an error; else the last barycentric direction that was used

    - #### getBary

          public PdBary[] getBary()

      Deprecated. since JavaView 3.96.006, use getVertexBary() instead.

    - #### getBary

          public PdBary getBary(int vertInd)

      Deprecated. since JavaView 3.96.006, use getVertexBary(int) instead.

    - #### getElemInd

          public int getElemInd(int vertInd)

      Deprecated. since JavaView 3.96.006, use getVertexElemInd(int) instead.

    - #### getElemInd

          public PiVector getElemInd()

      Deprecated. since JavaView 3.96.006, use getVertexElemInd(int) instead.

    - #### addPolygon

          public void addPolygon(PgPolygonOnElementSet poly)

      Deprecated. since JavaView 3.95.004, use merge(PgGeometryIf).

    - #### setBary

          public void setBary(int vertInd,
                     int elemInd,
                     PdBary bary)

      Deprecated. since JavaView 3.96.006, use setVertexBary(int, int, PdBary) instead.

    - #### setVertex

          public void setVertex(int vertInd,
                       int elemInd,
                       PdBary bary)

      Deprecated. since JavaView 3.96.006, use setVertexBary(int, int, PdBary) instead.

    - #### setVertex

          public void setVertex(int vertInd,
                       PdBary bary)

      Deprecated. since JavaView 3.96.006, use setVertexBary(int, int, PdBary) instead.

    - #### updateVertices

          public void updateVertices()

      Updates the Euclidean coordinates of the vertices from their barycentric coordinates.

    - #### removeMarkedVertices

          public int[] removeMarkedVertices()

      Remove vertices marked with tag PsObject#IS_DELETED from polygons. It is neccessary to keep a valid polygon set after removal of vertices in the superclass.
      Overrides:
        `removeMarkedVertices` in class `PgPolygon`
      Returns:
        array with indices of new positions of vertices
      See Also:
        `PgPointSet.removeMarkedVertices()`

    - #### computeNormalCurvature

          public void computeNormalCurvature()

      Compute the normal curvature of a surface mesh along a curve on the mesh. The result is stored in a scalar field that is added to the geometry.

    - #### getNormalCurvature

          public static PgVectorField getNormalCurvature(PgPolygonOnElementSet polygon,
                                         PdMatrix[] shapeOperator,
                                         PgVectorField normCurvature)

      Compute the normal curvature of a surface mesh along a curve on the mesh. If the argument normCurvature is null, a new scalar field is created.
      Parameters:
        `polygon` - curve on the surface mesh
        `shapeOperator` - shape operator at each vertex of the surface mesh
        `normCurvature` - the computed curvature is stored in this scalar field on the curve
      Returns:
        PgVectorfield the given scalar field normCurvature is return

    - #### makeNormalsFromSurfaceNormals

          public void makeNormalsFromSurfaceNormals()

      Create a (vertex-based) normal field along the curve from the (vertex-based) normal field of the surface.

    - #### makeNormalsFromSurfaceNormals

          public static void makeNormalsFromSurfaceNormals(PgPolygonOnElementSet polygon)

      Create a (vertex-based) normal field along the curve from the (vertex-based) normal field of the surface.
      Parameters:
        `polygon` - polygon on which the normal field is created

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